INTRODUCTION
China is the world’s largest producer and consumer of pork [
1]. With the improvement of living standards, better pork quality requirements are increasing except for pork quantity. Meat quality is the most important economic traits of pigs that include moisture, intramuscular fat (IMF), pH, meat color, water-holding capacity and tenderness, which is directly related to the economic benefits of pigs [
2]. Pork contains valuable nutrients that are important for human health, including amino acids (AAs), nucleotides, vitamins, minerals and fatty acids, which also determines pork nutritional value and flavor, and influences consumer acceptance and purchase intent in pork marketing [
3]. IMF, corresponding to the amount of fat within muscles, is positively related to meat quality including juiciness, tenderness, and flavor [
4]. IMF content was variable and affected by many factors including breed, diet, and environment, among which the breed contributes the most [
5,
6]. Since IMF-related genes are enriched in lipid metabolism processes including fatty acid uptake, β-oxidation, lipid synthesis, storage and lipolysis, which also determines meat sensory and nutritional quality [
5]. Thus, understanding the potential mechanism of lipid metabolism and meat characteristics, and seeking for solution to promote IMF deposition and improve meat quality are important.
China also has many local native breeds due to long-term natural and artificial selection, which have higher IMF contents and better meat characteristics (such as strong water-holding capacity, tender and juicy) than commercial pigs such as crossbreed Duroc×(Landrace Yorkshire) (DLY) pigs [
7,
8]. Among them, Laiwu (LW) pigs are famous for its tender meat, bright color, rich flavor with highest IMF content, representing an excellent local breed in North China [
7]. Shanghai white (SW) pig, which was bred in the late 1970s, is a local composite breed mainly made up of Yorkshire pigs, Subai pigs and Taihu pigs crossbred in Shanghai. This breed is famous for strong adaptability, higher reproduction rate and higher carcass lean meat percentage [
9]. However, until now, the molecular mechanism of IMF deposition among these pig breeds and meat characteristics including nutrient compositions especially in SW pigs are unknown. Therefore, the study aimed to investigate the lipid profiles, nutrient compositions and volatile compounds and potential mechanisms of IMF deposition in longissimus dorsi (LD) by comparing DLY, LW and SW pigs.
MATERIALS AND METHODS
Animal care
The present experiment was reviewed and approved by the ethics committee of Shanghai Jiao Tong University approved this study (202201188).
Sampling and intramuscular fat analysis
The fresh LD of castrated male LW (Body weight: 115.875 ±7.817 kg, n = 8), SW (102.400±2.011 kg, n = 8) and DLY (107.250±2.340 kg, n = 8) kg pigs were obtained from Jinan Laiwu Pig Industry Technology Research Institute Co., Ltd (Laiwu, China), Shanghai Swine Testing Center in Songjiang District (Shanghai) and Chongming district (Shanghai), respectively. The average slaughter ages were 177.500±0.945 d (SW), 300.375±1.194 d (LW), 173.600±1.580 d (DLY) respectively, which had reached the standardized market slaughter age and weight. All the pigs were reared under standard ventilation conditions and free access to diets and water. The dietary ingredients and nutritional levels were listed in
Supplement 1,
2. Samples were immediately placed on ice or stored in liquid nitrogen and transferred to the laboratory for analysis. The IMF content was analyzed in muscle tissues using the Soxhlet method with petroleum ether as the solvent and quantified as the weight percentage of wet muscle tissue.
Morphological analysis
The fresh LD were also fixed in 4% paraformaldehyde and embedded in paraffin, sectioned and stained with hematoxylin and eosin (H&E) for morphological analysis. The muscle samples were also embedded in frozen liver section for oil red staining to visualized lipid droplets.
Triglyceride, total cholesterol and lactate dehydrogenase determination
The muscle tissues were homogenized in phosphate-buffered saline buffer and the supernatants were gathered after centrifuging 3,000×g for 15 min. Protein concentration in the supernatants was measured through the bicinchoninic acid (BCA) protein assay kit. The content of triglyceride (TG), total cholesterol (TC) and activity of lactate dehydrogenase (LDH) in these samples were determined according to the manufacturers’ instructions (Nanjing Jiancheng Bioengineering Institute, Nanjing, China).
Redox parameters determination
The redox parameters were determined according to the manufacturers’ instructions. Protein concentration was measured through BCA protein assay kit. Superoxide dismutase (SOD), malondialdehyde (MDA), GSH/GSSG (Nanjing Jiancheng Bioengineering Institute) and NAD+/NADH (Shanghai Beyotime Biotechnology, Shanghai, China) were measured and the absorbance at 450, 530, 405 and 450 nm was recorded, respectively.
Transcriptome sequencing
The RNA of muscle tissues were extracted with the RNAiso Plus (#9108, TaKaRa, Kyoto, Japan). The results of RNA quality assessment were shown in
Supplement 3. After mRNA purification and fragmentation, RNA was reverse transcribed into cDNA. Polymerase chain reaction (PCR) amplification was used for enrichment of library fragments, and 450 bp fragments were selected. Library quality was assessed on the Agilent 2100 Bioanalyzer. The library preparations were sequenced on an Illumina Hiseq platform and paired-end reads were generated. To ensure the RNA-seq data quality for subsequent analysis, the sequencing error rate distribution and A/T/G/C content distribution were checked, and low quality (average base mass value<20) and N>5 (undetermined base) were filtered out to obtain clean reads. Reads were mapped to the rat genome and were annotated. The differential expression analysis, enrichment analysis and clustering analysis of the samples were further performed.
RNA isolation, cDNA synthesis and quantitative polymerase chain reaction
The total RNA from muscle tissues was extracted following the instructions of the RNA extraction kit. The concentration of RNA was quantified using a spectrophotometer (ThermoFisher Scientific, Chadds Ford, PA, USA). Then 1 μg of RNA was reverse transcribed into cDNA using the PrimeScrip RT reagent Kit. The real-time quantitative PCR reaction was applied to quantify the gene expression with the LightCycler96 system (Roche, Basel, Swiss). The reaction was performed in a total volume of 20 μL, including 10 μL SYBR Green mix, 2 μL cDNA, 7.2 μL H2O, and 0.4 μL each of forward and reverse primers. Amplification conditions were initial 95°C for 30 s, 40 cycles of 95°C for 5 s and 60 °C for 20 s, and a melting curve data. The primers were designed and listed in
Supplement 4. The quantification of the genes in each sample was performed in triplicate. β-actin was used as a housekeeping gene to normalize target gene transcript levels. The relative expression of target genes can be calculated by comparing the CT values of target genes and β-actin. The values of SW and DLY pigs were expressed as a fold of the LW pigs, using the formula 2-(
ΔΔCt), where ΔΔCt = (Ct
Target–Ct
β-actin) treatment–(Ct
Target–Ct
β-actin) model.
Medium-long chain fatty acids determination
A targeted metabolomics approach was used to study the compositions of medium-long chain fatty acids in LD according to our previous study [
10]. Briefly, 10% H
2SO4-CH
3OH solution (600 μL) were added into 50 mg sample, suspended for 1 min and bathed in water at 62°C for 2 h. After cooling, anhydrous sodium sulfate and 600 μL n-hexane were added and suspended for 1 min. Then, the solution was centrifuged at 3,500 r/min for 5 min. The supernatants were dried vacuum, dissolved in 200 μL n-hexane and analyzed by gas chromatograph/mass spectrometer (GC-MS). The samples were separated by gas chromatography on a DB-5MS capillary column (30 m×0.25 mm ID×0.25 μm). A standard sample mixture was used to identify the fatty acids profiles. The concentrations were calculated based on the chromatogram peak areas.
Amino acids determination
A targeted metabolomics approach based on multiple reaction monitoring (MRM) was used to quantify the contents of AAs according to our previous study [
10]. The sample pretreatment was the same to the UHPLC-QTOF-MS. The samples were separated by Agilent 1290 Infinity LC ultra-performance liquid chromatography. Mobile phase A were 25 mM ammonium formate+0.08% FA aqueous solution, and mobile phase B was 0.1% FA acetonitrile. The sample was placed in an automatic sampler at 4°C. The column temperature was 40°C and the flow rate was 250 μL/min. The injection volume was 2 μL. The gradient of liquid phase is as follows: mobile phase B decreases linearly from 90% to 70% during 0 to 12 min, decreases linearly from 70% to 50% during 12–18 min, decreases linearly from 50% to 40% during 18 to 25 min, increases linearly from 40% to 90% during 30 to 30.1 min and maintained at 90% during 30.1 to 37 min. A 5500 QTRAP mass spectrometer (AB SCIEX) was used for mass spectrometry analysis under positive ion mode. The conditions are as follows: source temperature 500°C, ion source gas1 (GAS1): 40, GAS2: 40, curtaingas: 30, ionsapary voltage floating: 5500 V. The ion pair was detected using the MRM mode. The contents of AAs were expressed as ng/mg in muscle tissue.
Volatile compounds determination
Analyses of volatile compounds were performed on an Agilent 7890A gas chromatograph coupled with an Agilent 5975C series mass spectrometer (Agilent Technologies, Santa Clara, CA, USA). Briefly, one gram of samples were weighed in sample bottle. 3 mL of 1 mol/L sodium chloride solution were added, balanced at 60°C for 40 min and analyzed in GC-MS (Agilent Technologies). GC conditions were: inlet temperature 250°C, high purity helium, 1 mL/min carrier gas flow rate, 300°C transmission line temperature, DB-5MS column (30 m×0.25 mm×0.25°C). Heating procedure were: the initial temperature was 40°C and maintained for 1 min, then it was heated to 250°C at a speed of 5°C/min and maintained for 2 min. MS conditions were: 230°C ion source temperature, 70 eV ionization energy, 50 to 500 mz mass scanning range.
Statistical analysis
The data in three groups were analyzed with one-way analysis of variance (ANOVA) followed by post-hoc Duncan’s test using the statistical software SPSS 17.0 (SPSS Inc., Chicago, IL, USA), while AAs data were analyzed with independent sample t test. Data were presented as mean±standard error of the mean. A p-value of <0.05 was considered statistically significant.
DISCUSSION
MDA is the end product of lipid peroxidation, which could decrease meat quality by increasing of discoloration, decreasing of water-holding capacity and nutritive values, and production of toxic compounds and off-flavor [
11]. The ratio of GSH/GSSG and NAD
+/NADH are important indicator of cellular health and redox potential, which protect meat against oxidative deterioration and are used as potential biomarkers to predict meat quality [
12,
13]. Previous study reported that diet supplementation with NAD
+ precursor nicotinic acid improved carcass characteristics by increasing IMF content, marbling score, redness (a*) and chroma (C*) values of LD muscle of steers [
14]. In this study, the higher ratio of GSH/GSSG and NAD
+/NADH, increased SOD activity and lower MDA in LD of LW pigs suggested higher intrinsic antioxidant defense systems and stress resistance of LW pigs than SW pigs. LDH is involved in glycolysis and its activity is high in glycolytic muscle fibers. The lower LDH activity indicated less glycolytic myofibers in LD of LW pigs compared with SW pigs. Similarly, LDH activity was reported to be lower in M. longissimus of Chinese local Bama pigs compared with Landrace pigs [
15]. Thus, the specific muscle fiber parameters such as muscle fiber size and area in these pig breeds need future study.
IMF (marbling) is an important factor determining meat tenderness, color, flavor and nutritional value. Fatty acids including SFA, MUFA and PUFA play an important role in IMF deposition and meats characteristics. The most abundant fatty acids in our results were palmitic acid, oleic acid, α-linolenic acid and elaidic acid. SFA such as palmitic acid appeared more powerful at inducing IMF deposition in pigs [
16]. The content of SFA are positive correlations with oxidative stability, fat firmness and IMF content, and negatively correlated with drip loss [
17]. In this study, SFA such as palmitic acid was increased in SW pigs compared with LW and DLY pigs, which is inconsistent with IMF content and needs further investigation. Trans fatty acids (TFA), belong to unsaturated fatty acids, its content in pigs’ tissues is lower and is positively proportional to long-term dietary intake [
18]. The lipogenic effect of TFA such as increased levels of LDL cholesterol are more than unsaturated fats, and as much as SFA [
19]. In this study, the contents of elaidic acid and linoelaidic acid (the trans geometric isomer of oleic and linoleic acids) in SW pigs were higher than those in LW and DLY, which is contrary to IMF content, suggesting that diet is not the major factor in inducing IMF deposition in different pig breeds. Nevertheless, the diets of pigs were different, which is one of the potential limitations in this study. PUFA are structural components of cell membrane that are essential for life. The effects of PUFA on meat quality of pigs such as IMF content are inconsistent. In a meta-analysis, PUFA supplementation could improve the meat quality of pigs by increasing IMF content [
20]. Recently, PUFA contents were positively related to the values of L* and b* and inversely related to IMF content in muscle of different breeds [
21,
22]. In our study, PUFA such as γ-linolenic acid, α-linolenic acid, arachidonic acid and docosapentaenoate (C22:5n-6) were higher in SW pigs than those in LW and DLY pigs. Linoleic acid metabolic pathways and arachidonic acid were negatively correlated with IMF deposition in muscle tissue [
23]. Docosapentaenoate (C22:5n-6) is an intermediate product between eicosapentaenoic acid and docosapentaenoic acid that exhibit good efficacy in lowering diet-induced lipids [
24]. All these studies suggested LD of SW pigs has abundant PUFA with high nutritional value, which was negatively correlated with IMF content.
AAs contents in the muscle not only contribute to nutritional value, but also affect meat quality such as flavor. In this study, compared with LW pigs, Asp was lower while GABA was higher in LD of SW pigs. Asp, belongs to the umami AAs, is significantly associated with meat color (a* values, redness), which is a very important meat quality trait and directly affect consumer acceptance and purchase intent [
25]. The increased Asp in the LW pigs probably explained consumer preference for different types of pork. GABA is produced through α-decarboxylation of glutamic acid catalyzed by glutamate decarboxylase, which has beneficial effects on promoting daily gain, improving antioxidant status and decreasing inflammatory response in animals [
26]. GABA was reported to improve meat quality such as decreasing of drip loss and increasing of pH
45min in longissimus muscle of growing-finishing pigs after transportation stress [
27]. GABA content in cattle meat was negatively correlated with IMF content [
28], which is similar to our study in pigs. These studies suggested GABA negatively regulated lipid deposition in muscular tissues of domestic animals. However, the potential molecular mechanism of GABA-mediated lipid deposition is unknown and needs further investigation.
Perilipins (Plins) are abundant lipid droplet proteins that regulate lipid stores and hydrolysis.
Plin1 was increased during adipocyte differentiation and was positively related to IMF content in pigs [
29].
Nedd4 is a novel regulator of adipogenesis and cholesterol metabolism since knockdown of
Nedd4 in 3T3-L1 adipocytes suppressed adipocyte conversion [
30]. In this study, the increased
Plin1 and
Nedd4 expression in LW pigs compared with DLY and SW pigs. Furthermore,
Plin1 expression was positively related to TC, and
Nedd4 expression was positively related to IMF and TG contents, suggested higher expression of
Plin1 and
Nedd4 are responsible for intramuscular lipid deposition, adipocyte conversion and adipogenesis of pigs. Contrarily, Plin3 expression decreased in LW pigs compared with DLY and SW pigs, and its expression is negatively to TC, IMF and TG contents. Plin3 is a small/nascent lipid droplet marker that widely expressed in tissue, while knockdown of Plin3 reduced lipid oxidation in myotubes from lean humans [
31]. Thus, the specific role of Plin3 in lipid hydrolysis or oxidation in LD of pigs need further verification.
HSL and
Mgll are responsible for lipid catabolism by hydrolyzing DAG into monoacylglycerols (MAGs), and hydrolyzing MAG into glycerol and free fatty acids, respectively [
10]. In this study,
Mgll was lower and
HSL was higher in LW pigs when compared with DLY pigs.
Mgll expression was negatively related to contents of TG, TC and IMF, while
HSL was positively related to contents of TG and IMF. This was similar to previous studies which showed that
HSL was positively correlated with IMF, while
Mgll was negatively correlated with IMF [
32]. Of note,
HSL was a candidate gene involved in fat deposition, which could directly interact with
Plin1 to form a complex on lipid droplets to regulate lipolysis and fatty acid biosynthesis [
33]. The increased
HSL expression was consistent with increased
Plin1 expression in LW pigs compared with SW pigs in our study, suggesting
Plin1/
HSL pathways play important role in lipid deposition of pigs. Fatty acid transporting systems (including
CD36 and
FABP3) are required for uptake and utilization of long-chain fatty acids, which are highly expressed in cardiac and skeletal muscle tissues [
34]. The ATP-binding cassette transporter
ABCG1 is responsible for export of cholesterol, phospholipids and oxysterols, while
ABCA4 is a transporter for phosphati-dylethanolamine in photoreceptor cells [
35]. In this study,
ABCA4 expression was higher and
FABP3 was lower in LW pigs when compared with SW pigs and DLY pigs respectively, indicating different substrates transportation ability of LD from different pig breeds. PPARA, belong to a group of nuclear regulatory factors family, plays a key role in fatty acid catabolism by transcriptional regulation of genes involved in fatty acid oxidation. In this study, PPARA expression was negatively related to contents of TC and IMF, suggesting an important target that negatively regulating lipid deposition of pigs. All the above results indicate that differences in IMF deposition between breeds is probably the combined results of network regulation of lipid metabolism genes (
Figure 5). Further studies are needed to explore the network regulation pathways based on the methods of integrative and systems biology.
Flavor is a very important attribute contributing to meat sensory quality and consumer choice. A variety of volatile organic compounds such as alkanes and alkenes, alcohols, aldehydes, ketones, esters, amides, and terpenes are responsible for meat flavor. Many factors have been reported to affect meat flavor including species, age, diet, muscle anatomical location and cooking methods [
36]. In this study, 6 ketones, 4 alkenes, 11 alkanes, 2 aldehydes, 1 alcohol were decreased in LW pigs when compared with SW pigs. Ketones, as products of lipid oxidation, have fruity and creamy aromas. Alkanes and alkenes could be produced by radiolytic degradation of unsaturated fatty acids and AAs [
37]. Aldehydes are produced by lipid degradation and Strecker AA degradation, which are associated with pleasant odors (fatty and fruity). Alcohols produced from degradation of linoleic acid, contribute less to the flavor than aldehydes [
38]. In this study, increased volatile compounds in SW pigs indicated higher fatty, fruity and creamy aromas than LW pigs, which possibly correlated with consumers’ acceptance. Indeed, appropriate IMF increased flavor, juiciness and texture, and reduced off-flavor, while excessive IMF decreased volatile and taste compounds [
39]. Dietary nutrients supplementation such as l-arginine also increased the contents of fatty acid and volatile compounds such as ketones in muscle from pigs, and increased tenderness, juiciness and overall liking score [
40]. The increased volatile compounds in SW pigs are in accordance with the results of increased fatty acids and decreased redox potential, suggesting that differences in flavor compounds were primarily related to variance of precursors and the extent of lipid peroxidation. Thus, further studies are needed to explore the sensory analysis and its relationship with volatile compound profiles.